Fungal leaf endophyte of Zamia amplicon sequencing using the ITS1 reg... - SRA

SRX23121295: Fungal leaf endophyte of Zamia amplicon sequencing using the ITS1 region
1 ILLUMINA (Illumina MiSeq) run: 53,422 spots, 26.8M bases, 15.2Mb downloads

Design: The amplicon sequencing library was prepared with a two-step dual-indexed PCR approach

Submitted by: Laval University

Study: Phyllosphere of Zamia species from Panama

PRJNA1061598 • SRP482161 • All experiments • All runs

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The data deposited in this project serve to investigate how plant-microbe interactions mediate secondary metabolic composition on the leaf of Zamia species from Panama. Using an "omics approach we characterized the leaf endophytic microbial, bacteria 16S ARN, and fungi ITS1, community alpha- and beta-diversity in two phylogenetically related Zamia species with contrasting habitats, terrestrial vs epiphytic, and relate specific leaf endophytes to host phytochemicals.

Sample:

SAMN39285991 • SRS20074847 • All experiments • All runs

Organism: Zamia nana

Library:

Name: PA182507

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Runs: 1 run, 53,422 spots, 26.8M bases, 15.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR27449518	53,422	26.8M	15.2Mb	2024-01-07

ID:: 31240035

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